Preheat oven to 350°F (175°C).
Place squash and onions in a medium-sized sauce pan.
Cover the pan, and place on stove over medium to medium-high heat, cooking until vegetables are translucent and soft.
Drain the vegetables of the water, and place back in sauce pan.
Mix the coconut milk, almond meal, and paprika into the squash/ onion mixture, and stir until well combined.
Place the mixture into a casserole dish, and sprinkle the top with the pecans.
Bake for approximately 20 minutes or until mixture is very bubbly and somewhat thickened and pecans are golden brown.